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How Parameters Change in Inbred and Outbred Populations

How Parameters Change in Inbred and Outbred Populations

Calculating Coefficient of Inbreeding

  • The coefficient of inbreeding is commonly symbolized as Fx (called, “F of x”)
  • The basic formulae for Fx  is Σ(1/2)n where n symbolizes no. of nodes in the path

Pedigree Problem 1:

HOW PARAMETERS CHANGE IN INBRED AND OUTBRED POPULATIONS

Animals 1 and 2 are common to the sire and dam of X. Assume that they are each heterozygous at the hypothetical A locus and share no alleles with each other. Because the members of a homologous pair of chromosomes segregate from each other at meiosis, the probability that an individual will pass one of the two alleles at a locus to an offspring is 1/2. Since each passage of an allele from an individual to an offspring is an independent event, the probability that a given allele will be passed through n generations is (1/2) n. In this case of a brother-sister mating, we wish to compute the coefficient of inbreeding of animal x. There are two ancestors that are common to the sire and dam of animal x, animal 1 and animal 2.

Solutions:

Probability that the allele A1 will be transmitted to x through animal 3 = (1/2)=1/4

Probability that A1 will be transmitted to x through 4 = (1/2)² = 1/4

Probability that x will receive A1 from both 3 and 4 = (1/4)(1/4) = 1/16

Likewise, the probability that x will receive A2 from both 3 and 4 = 1/16

Probability that x will receive A2 from both 3 and 4 = 1/16

Probability that x will receive A3 from both 3 and 4 = 1/16

Probability that x will receive A4 from both 3 and 4 = 1/16

Probability that x will be homozygous for A1 ,A2 ,A3 , or A4   (add the individual probabilities)   =4/16 = 1/4

The coefficient of inbreeding of = x  = ¼

Pedigree Problem 2:

HOW PARAMETERS CHANGE IN INBRED AND OUTBRED POPULATIONS

In this case of a father-daughter mating, there is only one ancestor that is common to the sire and dam of animal x: the father, animal 1. The alleles   and   present in animal 2 are irrelevant to the calculation of the inbreeding coefficient of animal x because he could not have received either of them from both his sire and his dam.

Probability that the allele A1 will be transmitted to x through animal 3= (1/2)²=1/4

Probability that A1 will be transmitted to x from 1 directly = 1/2

Probability that x will receive A1 from both parents = (1/2)(1/4) = 1/8

Likewise, the probability that x will receive A2 from both parents = 1/8

Probability that x will be homozygous for either A1 or A2 = FX = 2/8 = 1/4

Note that   is the same for brother X sister as for parent X offspring matings, although in the latter case, there is only one common ancestor.

Pedigree Problem 3:

HOW PARAMETERS CHANGE IN INBRED AND OUTBRED POPULATIONS

In this mating between first cousins, there are two ancestors that are common to both the sire and the dam of animal x: animals 1 and 2.

Probability that animal x will receive A1 through animal 6 = (1/2)³ = 1/8

Probability that A1 will be transmitted to x through 5 = (1/2)³ = 1/8

Probability that x is homozygous for A1 = (1/8)(1/8) = 1/64

Probability that x will be homozygous for A1,A2 ,A3  or A4  =  FX  = 4/64  =  1/16

Pedigree Problem 4:

HOW PARAMETERS CHANGE IN INBRED AND OUTBRED POPULATIONS

Number of Nodes = 5

Inbreeding Coefficient = f= (1/2)n

f= (1/2)5

=0.03125 = 1/32

The progeny of first 1/2 cousins have an inbreeding coefficient of 1/32.

Pedigree Problem 5: Full first cousins

HOW PARAMETERS CHANGE IN INBRED AND OUTBRED POPULATIONS

There are now two paths:

IACEDBI

IACFDBI

Nodes/path = 5

F  = (1/2)N1 + (1/2)N2

= (1/2)5 + (1/2)5

= 0.03125 + 0.03125

= 1/16

The progeny of first cousins have an inbreeding coefficient of 1/16.

Also Study:

Inbreeding in Humans | Inbreeding in Animals | Inbreeding in Plants

What is Heterosis

How To Calculate Breeding Value

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